The 1939 Jacksonville State Eagle Owls football team represented Jacksonville State Teachers College (now known as Jacksonville State University) as a member of the Alabama Intercollegiate Conference (AIC) and the Southern Intercollegiate Athletic Association (SIAA) during the 1939 college football season. Led by second-year head coach Chester C. Dillon, the Eagle Owls compiled an overall record of 0–8–2 with a mark of 0–3–1 in both AIC and SIAA play.
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